PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00070.96
Common NameAMTR_s00070p00154800, LOC18449071
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family ZF-HD
Protein Properties Length: 219aa    MW: 23851.1 Da    PI: 9.4342
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00070.96genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer103.11.9e-324799558
                              ZF-HD_dimer  5 rYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58
                                              Y+eClkNhAa++Ggha DGCgEfm++ geeg+++alkCaACgCHRnFHR+e +
  evm_27.model.AmTr_v1.0_scaffold00070.96 47 GYRECLKNHAAAIGGHANDGCGEFMAA-GEEGSIEALKCAACGCHRNFHRKEIS 99
                                             6*************************9.999********************976 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047704.0E-294798IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015662.2E-294898IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257746.0E-224897IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.6824897IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466895.74E-19140210IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.3E-30141211IPR009057Homeodomain-like
TIGRFAMsTIGR015657.6E-26150206IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MMDLSVVPYS HNSPGNSSTG GGPKPEKNGG VLDPLDSPLS KPSYLIGYRE CLKNHAAAIG  60
GHANDGCGEF MAAGEEGSIE ALKCAACGCH RNFHRKEISV TPLPFSSPYL HNAAPTWDKK  120
LKFPPPLTRS IDNEGFTVFG QGGGTKNGTK RYRTKFTQDQ KEKMQAFADK LGWRIQKQDD  180
VALQQFCMEV GVKRHVLKVW MHNNKNTLGK KDSLTAST*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A3e-281492071775ZF-HD homeobox family protein
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006859182.11e-165PREDICTED: zinc-finger homeodomain protein 2
SwissprotQ9SB614e-61ZHD2_ARATH; Zinc-finger homeodomain protein 2
TrEMBLU5DDM41e-165U5DDM4_AMBTC; Uncharacterized protein
STRINGEFJ045872e-62(Selaginella moellendorffii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP9116237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24660.12e-62homeobox protein 22
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]